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Correcting for the free energy costs of bond or angle constraints in molecular dynamics simulations.

Gerhard König,B. Brooks

2015 · DOI: 10.1016/j.bbagen.2014.09.001
Biochimica et Biophysica Acta · 42 Citations

TLDR

Methods to increase the accuracy and precision of free energy calculations by calculating the free energy costs of constraints during post-processing and reducing errors arising from constraints by about an order of magnitude are introduced.